普通烟草MATE基因家族分析及功能预测

摘要：植物多药和有毒化合物排出家族（multidrug and toxic compound extrusion,MATE）是一类可转运毒素、金属离子、次级代谢产物的次级转运蛋白家族。该家族主要在植物的解毒机制中发挥作用,部分成员也参与植物的形态建成过程。MATE家族在烟草基因组中的数量、特征及功能目前尚未开展系统分析。本研究利用生物信息学方法对普通烟草（Nicotiana tabacum）基因组中的MATE基因进行了预测分析,共预测到131个基因,分为4个亚家族。亚家族3在进化树中形成较为独立的分枝,其跨膜区数量、亚细胞定位、保守结构域方面与其他亚家族不同。转录组数据显示,相当一部分MATE家族基因在所有组织中低量表达。GO功能注释结果表明该家族成员主要作为一种转运体,在应激响应、生物调控等过程中发挥作用。本研究为烟草及其他植物中MATE家族的鉴定和功能研究提供了数据基础。     

Knowing your enemies: Integrating molecular and ecological methods to assess the impact of arthropod predators on crop pests

The importance of natural enemies as the foundation of integrated pest management (IPM) is widely accepted, but few studies conduct the manipulative field experiments necessary to directly quantify their impact on pest populations in this context. This is particularly true for predators. Studying arthropod predator–prey interactions is inherently difficult: prey items are often completely consumed, individual predator–prey interactions are ephemeral (rendering their detection difficult) and the typically fluid or soft‐bodied meals cannot be easily identified visually within predator guts. Serological techniques have long been used in arthropod predator gut‐contents analysis, and current enzyme linked immunosorbent assays (ELISA) are highly specific and sensitive. Recently, polymerase chain reaction (PCR) methods for gut‐contents analysis have developed rapidly and they now dominate the diagnostic methods used for gut‐contents analysis in field‐based research. This work has identified trophic linkages within food webs, determined predator diet breadth and preference, demonstrated the importance of cannibalism and intraguild predation within and between certain taxa, and confirmed the benefits (predator persistence) and potential disadvantages (reduced feeding on pest species) of the availability of alternative nonpest prey. Despite considerable efforts to calibrate gut‐contents assays, these methods remain qualitative. Available techniques for predator gut‐contents analysis can provide rapid, accurate, cost‐effective identification of predation events. As such, they perfectly compliment the ecological methods developed to directly assess predator impacts on prey populations but which are imperfect at identifying the key predators. These diagnostic methods for gut‐contents analysis are underexploited in agricultural research and they are almost never applied in unison with the critical field experiments to measure predator impact. This paper stresses the need for a combined approach and suggests a framework that would make this possible, so that appropriate natural enemies can be targeted in conservation biological control.     

The impact of high‐order epistasis in the within‐host fitness of a positive‐sense plant RNA virus

RNA viruses are the main source of emerging infectious diseases because of the evolutionary potential bestowed by their fast replication, large population sizes and high mutation and recombination rates. However, an equally important property, which is usually neglected, is the topography of the fitness landscape. How many fitness maxima exist and how well they are connected is especially interesting, as this determines the number of accessible evolutionary pathways. To address this question, we have reconstructed a region of the fitness landscape of tobacco etch potyvirus constituted by mutations observed during the experimental adaptation of the virus to the novel host Arabidopsis thaliana. Fitness was measured for many genotypes and showed the existence of multiple peaks and holes in the landscape. We found prevailing epistatic effects between mutations, with cases of reciprocal sign epistasis being common among pairs of mutations. We also found that high‐order epistasis was as important as pairwise epistasis in their contribution to fitness. Therefore, results suggest that the landscape was rugged due to the existence of holes caused by lethal genotypes, that a very limited number of potential neutral paths exist and that it contained a single adaptive peak.     

海拔对白肋烟质体色素含量及相关基因表达的影响

以‘鄂烟1号’为供试品种,于湖北恩施选取高、中、低3个海拔(海拔高度分别为1 560m、1 200m、800m)种植区,研究不同海拔白肋烟主要生育期(旺长期、成熟期)内烟叶质体色素含量及其合成代谢过程中相关基因表达的差异,探讨白肋烟质体色素代谢对海拔高度的生理响应机制。结果表明:烟叶叶绿素a、叶绿素b和叶绿素总量及旺长期类胡萝卜素总量均以中海拔地区最高,且显著或极显著高于其他海拔梯度;成熟期高海拔烟叶类胡萝卜素总量最高,且较旺长期明显增加。叶绿素及旺长期类胡萝卜素合成有关的基因均为中海拔表达最强,成熟期类胡萝卜素合成基因在高海拔表达最强。结果说明‘鄂烟1号’更适宜种植在中海拔地区。     

棉花纤维发育相关基因GhPRP10的克隆及其功能分析

利用电子序列拼接结合RT-PCR技术,从12DPA(开花后天数)棉纤维中克隆到1个编码富含脯氨酸蛋白(PRPs)基因,命名为GhPRP10(登录号KP036633)。GhPRP10基因开放阅读框为684bp,编码228个氨基酸,其中脯氨酸(Pro)含量为34.6%。序列分析发现GhPRP10蛋白具有N端信号肽和富含脯氨酸区域,属于第一类PRPs。实时荧光定量PCR(RT-PCR)结果显示,GhPRP10在棉纤维组织中优势表达,在纤维发育过程中的表达量呈现先升高后降低的趋势,在18DPA纤维中表达量最高。利用Gateway技术构建植物过量表达载体,转入烟草BY-2悬浮细胞,表型观察和细胞长度测量结果显示,转GhPRP10基因细胞比野生型细胞显著增长。根据该基因的组织表达特征和转基因细胞表型分析,推测GhPRP10基因在纤维伸长和次生壁合成过程中发挥作用。     

烟草叶片对不同光质短期应答的代谢轮廓

在烟草上部叶片生理成熟期给以白、紫外A、蓝、绿、黄、红6种LED灯光处理,研究了烟草叶片对不同光质的短期应答.结果表明: 采用非靶标检测方法共检测到68种GC/MS(气相色谱/质谱)稳定的代谢产物,在PLS-DA得分图中,6种光处理的样品被明显分开;有61种在质谱库中得到鉴定,其中45种代谢物质含量在不同光处理间存在显著性差异,主要为有机酸类、糖类、TCA循环中间产物、氨基酸类等初级代谢产物;采用差异性代谢物的热力图及聚类分析将其分为5类,同时也将6个处理明显分开,其中红、蓝光处理差异最为明显,除B类物质外,其他4类均以红光处理高于蓝光处理.采用靶标性检测方法测定了3种生物碱、5种多酚及茄尼醇的含量,4种(加上非靶标测定到的烟碱)生物碱在不同光质处理间的变化趋势一致,红光和黄光明显促进了生物碱积累;莰菲醇基芸香苷和芸香苷在不同处理之间的变化趋势一致,以蓝光处理最低、黄光最高,光质对其他3种多酚的影响各异;黄光明显抑制了茄尼醇的积累,蓝光处理的叶片中茄尼醇含量最高.说明光质变化对烟草脂肪酸代谢、糖代谢、生物碱代谢、氨基酸代谢、TCA循环和莽草酸途径等多条代谢途径均有显著的影响.     

Potential analysis of grass endophytes Neotyphodium as biocontrol agents

Many grasses in the subfamily Pooideae develop symbioses with Neotyphodium fungal endophytes, which exist widely in nature. The stably symbiotic relationship not only ensures accessible nutrients required by Neotyphodium fungal endophytes, but also significantly increases the resistance of host grasses to biological stresses through the production of secondary metabolites. Previous studies show that infected grasses with endophytic fungi have prominently enhanced resistance to pests, plant diseases, companion plants and other biological stresses. Grass endophytic fungi show remarkable resistant to at least 79 species of pests from three classes; arachnida, nematode and insecta, and to at least 22 species of pathogenic fungi. Although the biotechnological application of endophytic fungi in grass breeding for variety selection and quality improvement has progressed well, opportunities remain for further exploring the use of fungal endophytes among different host grasses coupled with the examination of genetic stability of Neotyphodium in novel host grasses. In the future application of endophytic fungi as a bio-control method, researchers should not only consider specificities of host grasses, but also need to have comprehensive analysis and knowledge about the mutual relationships among grasses, endophytic fungi and ecological environments, which will help use endophytic fungi to better serve humanity.     

Potential of the bean α‐amylase inhibitor αAI‐1 to inhibit α‐amylase activity in true bugs (Hemiptera)

True bugs (Hemiptera) are an important pest complex not controlled by Bt‐transgenic crops. An alternative source of resistance includes inhibitors of digestive enzymes, such as protease or amylase inhibitors. αAI‐1, an α‐amylase inhibitor from the common bean, inhibits gut‐associated α‐amylases of bruchid pests of grain legumes. Here we quantify the in vitro activity of α‐amylases of 12 hemipteran species from different taxonomic and functional groups and the in vitro inhibition of those α‐amylases by αAI‐1. α‐Amylase activity was detected in all species tested. However, susceptibility to αAI‐1 varied among the different groups. α‐Amylases of species in the Lygaeidae, Miridae and Nabidae were highly susceptible, whereas those in the Auchenorrhyncha (Cicadellidae, Membracidae) had a moderate susceptibility, and those in the Pentatomidae seemed to be tolerant to αAI‐1. The species with αAI‐1 susceptible α‐amylases represented families which include both important pest species but also predatory species. These findings suggest that αAI‐1‐expressing crops have potential to control true bugs in vivo.     

Sex pheromone of the cloaked pug moth,Eupithecia abietaria (Lepidoptera: Geometridae), a pest of spruce cones

The sex pheromone of the cloaked pug moth, Eupithecia abietaria Götze, an important cone‐feeding pest in spruce seed orchards in Europe, was investigated. Chemical and electrophysiological analyses of pheromone gland extracts of female moths and analogous analyses of synthetic hydrocarbons and epoxides of chain length C₁₉ and C₂₁ revealed (3Z,6Z,9Z)‐3,6,9‐nonadecatriene (3Z,6Z,9Z‐19:H) and 3Z,6Z‐cis‐9,10‐epoxynonadecadiene (3Z,6Z‐cis‐9,10‐epoxy‐19:H) as candidate pheromone components, which were found in a gland extract in a ratio of 95 : 5. In field trapping experiments, conspecific males were only attracted to a combination of 3Z,6Z,9Z‐19:H and the (9S,10R)‐enantiomer of 3Z,6Z‐cis‐9,10‐epoxy‐19:H. The (9R,10S)‐enantiomer was not attractive, which is in agreement with studies on other Eupithecia species, for which males have only been attracted by the (9S,10R)‐enantiomer of epoxides. Subsequent experiments showed that E. abietaria males were attracted to a wide range of ratios of the two active compounds and that trap catches increased with increasing dose of the binary blend. A two‐component bait containing 300 μg 3Z,6Z,9Z‐19:H and 33 μg of the (9S,10R)‐enantiomer of 3Z,6Z‐cis‐9,10‐epoxy‐19:H was efficient for monitoring E. abietaria in spruce seed orchards in southern Sweden, where this species has probably been overlooked as an important pest in the past. With sex pheromones recently identified for two other moths that are major pests on spruce cones, the spruce seed moth, Cydia strobilella L., and the spruce coneworm, Dioryctria abietella Denis & Schiffermüller, pheromone‐based monitoring can now be achieved for the whole guild of cone‐feeding moths in European spruce seed orchards.     

Biochar amendment to soils impairs developmental and reproductive performances of a major rice pest Nilaparvata lugens (Homopera: Delphacidae)

Biochar amendments to soils had aroused much interest for having potential for greenhouse gas mitigation, soil improvement and increased crop productivity. However, little attention had been focused on the influence of biochar amendments on herbivorous insect pests. This study investigated whether a biochar amendment affected developmental and reproductive performances of the rice brown planthopper (Nilaparvata lugens) feeding on rice plants. The biochar from the pyrolysis of wheat straw was used for treatments of soils (from a fallow rice field), and the treated soils were applied to grow rice seedlings in small vials, in which N. lugens life history was observed. The nymphal development time was delayed and nymph‐to‐adult survival decreased with a high level of 200 g/kg biochar application. Herbivore lifetime fecundity decreased with increasing amounts of biochar, from 256 eggs under the control down to 69 eggs under the high level (200 g/kg) of biochar application. Egg‐hatching rate significantly decreased at the highest biochar level (200 g/kg), compared to the other lower biochar levels. Our results suggest that biochar amendment to rice fields may have negative impacts on the rice brown planthoppers when applied at level of 200 g/kg of soil.